PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 150aa    MW: 17256.9 Da    PI: 9.9849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000644567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016502021.1 45 FECKTCNRQFSSFQALGGHRARH 67
                    89**********99999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.36E-843113No hitNo description
PfamPF139123.1E-124469IPR007087Zinc finger, C2H2
SMARTSM003550.214567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9934572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.1E-1090115IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66391113IPR007087Zinc finger, C2H2
SMARTSM003550.2791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVVLPKKRER ESELDTITTM ANYLMLLSSQ ENHFDNINNS PNRVFECKTC NRQFSSFQAL  60
GGHRARHKKP RLMGELNYHQ LPTSPPKPKT HECSICGLEF PIGQALGGHM RRHRAMLNEN  120
KIQVPHHVVK KSNNCRRVLC LDLNLTPFGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502021.11e-109PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424102e-31ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLO220862e-81O22086_PETHY; ZPT2-14
STRINGSolyc05g054650.1.11e-66(Solanum lycopersicum)
STRINGPGSC0003DMT4000605239e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-35C2H2 family protein